6.在一系列位置输出核苷酸多样性 zcat input_file.vcf.gz|vcftools--vcf---site-pi--positions SNP_list.txt--outnucleotide_diversity
6.在一系列位置输出核苷酸多样性 zcat input_file.vcf.gz | vcftools --vcf - --site-pi --positions SNP_list.txt --outnucleotide_diversity AI代码助手复制代码
Measures the nucleotide diversity in windows, with the number provided as the window size. The output file has the suffix “.windowed.pi”. The latter is an optional argument used to specify the step size in between windows.滑动窗口计算sliding windows,参考A reference genome for common bean and...
VCFtools - v0.1.13 (C) Adam Auton and Anthony Marcketta 2009 Parameters as interpreted: --vcf all.gatk.fliter.vcf --out watermelon.pi --site-pi --remove-filtered-geno-all After filtering, kept 19 out of 19 Individuals Outputting Per-Site Nucleotide Diversity Statistics... After filtering,...
Outputting Per-Site Nucleotide Diversity Statistics... After filtering, kept442957outof a possible442957Sites Run Time=12.00seconds 比较验证: root@DESKTOP-1N42TVH:/home/test3# ls plink.hwe plink.log plink.nosex result.log result.map result.nosex result.ped result.vcf vcf_pi.log vcf_pi.sites...
zcat input_file.vcf.gz | vcftools --vcf - --site-pi --positions SNP_list.txt --outnucleotide_diversity 转载自:https://www.jianshu.com/p/badd24cbc538 此外,我们在网易云课堂上有各种教学视频,有兴趣可以了解一下: 1. 文章越来越难发?是你没发现新思路,基因家族分析发2-4分文章简单快速,学习链接...
Measures the nucleotide diversity in windows, with the number provided as the window size. The output file has the suffix ".windowed.pi". The latter is an optional argument used to specify the step size in between windows. OUTPUT FST STATISTICS ...
--window-pi <integer> --window-pi-step <integer> Measures the nucleotide diversity in windows, with the number provided as the window size. The output file has the suffix ".windowed.pi". The latter is an optional argument used to specify the step size in between windows. OUTPUT FST ...
I have introduced a few small changes in order to allow computation of statistics with haploid data. When enabling the --haploid switch, vcftools will assume that genotypes are haploid instead of d...
Measures the nucleotide diversity in windows, with the number provided as the window size. The output file has the suffix ".windowed.pi". The latter is an optional argument used to specify the step size in between windows. OUTPUT FST STATISTICS ...