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vcftools主要处理vcf/bcf文件,包括:过滤(filter) ;变异位点的基本统计;数据格式的转换;多个vcf文件的比较(compare files);集合运算等。 #安装 #傻瓜式安装 conda install -c bioconda vcftools #安装2 官网下载(https://vcftools.github.io/examples.html),下载最新版本, wget https://github.com/vcftools/vcftools...
Build from GitHub git clone https://github.com/vcftools/vcftools.git cd vcftools ./autogen.sh ./configure make make install You many needsudopermissions to runmake install. Documentation Documentation and usage examples can be found here:
https://vcftools.github.io/man_latest.html#AUTHORS 基本参数 vcftools[--vcf/gzvcf/bcfFILE][--outOUTPUTPREFIX][FILTERINGOPTIONS][OUTPUTOPTIONS]#参数说明#输入#–vcf 输入vcf文件#–gzvcf 输入gz压缩的vcf文件#–bcf 输入bcf文件#输出 -out#-out 输出文件#–stdout/-c标准输入,可后接管道操作#–temp指定...
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project. - vcftools/src/cpp/vcf_entry_setters.cpp at master · vcftools/vcftools
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VCFtoolsvcftools.github.io/man_latest.html#AUTHORS 功能: vcftools常见的功能就是计算pi(π),Fst,Tajima's D,He等,但其功能远不止如此。 1,输出vcf文件中指定染色体上所有位点的等位基因频率 vcftools --vcf all.SNP.vcf --freq --chr CM032067.1 --out chr1_analysis ...
在官网(https://vcftools.github.io/index.html)下载VCFtools安装包,下载地址链接为https://vcftools.github.io/downloads.html,该网页内界面如下所示,方框内为下载按钮。如果点击的是View On GitHub需要进入release中寻找最新版本(https://github.com/vcftools/vcftools/releases/tag/v0.1.16)。
这里,介绍第一篇:vcftools的安装。(当然,最简单的方法是conda安装,这里介绍一下源码编译安装) 1. 下载 https://vcftools.github.io/examples.html 下载到本地,上传到服务器中。 2. 解压缩 unzipvcftools-vcftools-v0.1.16-18-g581c231.zip cdvcftools-vcftools-581c231/ ...
Build from GitHub git clone https://github.com/vcftools/vcftools.git cd vcftools ./autogen.sh ./configure make make install You many needsudopermissions to runmake install. Documentation Documentation and usage examples can be found here: