根据上面讲到的计算Fst的步骤计算得到如下结果: #软件计算群体遗传分化指数Fst 上面的测试例子是通过手工演示的,在实际计算大数据时,我们可以使用VCFtools或者GCTA软件进行Fst计算。 #使用VCFtools计算Duroc测试群体和Landrace测试群体Fst 到这里三期生信小白成长记就要结束了,我们总结一下,我们在这三期文章里讲述了检测群体内...
but in one population that particular position was not called, then you're going to set it to 0. You will then count this SNP as perfectly differentiated between the two pops when it's not. Not sure how vcftools handles missing data for Fst calculations, but maybe there exists some implem...