GitHub is where people build software. More than 150 million people use GitHub to discover, fork, and contribute to over 420 million projects.
We use wrappers that are hosted on github:https://github.com/cokelaer/sequana-wrappers/but if you do not have internet access, you should download the repository locally before using the pipeline. For example: export WRAPPERS=/home/user/Wrappers git clonegit@github.com:sequana/sequana-wrappers....
When--remove_ribo_rnais specified, the pipeline usesSortMeRNAfor the removal of ribosomal RNA. By default,rRNA databasesdefined in the SortMeRNA GitHub repo are used. You can see an example in the pipeline Github repository inassets/rrna-default-dbs.txtwhich is used by default via the--ribo_...
.github assets bin conf docs lib modules subworkflows workflows .editorconfig .gitattributes .gitignore .gitpod.yml .nf-core.yml .pre-commit-config.yaml .prettierignore .prettierrc.yml CHANGELOG.md CITATIONS.md CODE_OF_CONDUCT.md LICENSE README.md main.nf modules.json nextflow.config nextflow_sc...
ubu v1.2 (https://github.com/mozack/ubu/archive/v1.2.tar.gz) mRIN picard-tools v1.126 FastQC v0.11.3 bedtools v2.23 These software have already been installed in two computer clusters at MSKCC: HAL and LUNA. So users of these two clusters don't need install them (except Rsubread) to...
GitHub is where people build software. More than 150 million people use GitHub to discover, fork, and contribute to over 420 million projects.
New issue 64 Open618 Closed Author Label Projects Milestones Assignee Sort 👍👎😄🎉😕 ️🚀👀 Indexing only run does not produce all indexes when using skip_alignment optionbugSomething isn't working #1494 openedJan 23, 2025bypmoris ...
You can find numerous talks on thenf-core events pagefrom various topics including writing pipelines/modules in Nextflow DSL2, using nf-core tooling, running nf-core pipelines as well as more generic content like contributing to Github. Please check them out!
git clone https://github.com/cnio-bu/cluster_rnaseq.git 3. Configure the pipeline.Before executing the pipeline, the users must configure it according to their samples. To do this, they must fill these files:TIP: different analysis can be run using just one cloned repository. This is ...
GitHub is where people build software. More than 100 million people use GitHub to discover, fork, and contribute to over 420 million projects.