模型众多,并且,更新,许多模型都是近几年单独发了篇MBE,虽然我不敢说两个软件谁更好,但Hyphy官方是说比paml更好的,比如hyphy的BUSTED相比paml的branch-site model,hyphy官方说法为 BUSTEDis a method described inMurrell et al. It has been extensively tested and shows better power and accuracy than either"...
⭐aBSREL是在各个分支检测正选择的首选方法⭐,需要注意一点的是,aBSREL是多次独立对指定的每一支进行检验的,也就是说,你指定了许多的branches,实质上和多次指定不同一个branch来多次运行,效果是一样的,而并非将这些branches视为一个整体去做检测 BUSTED(Branch-Site Unrestricted Statistical Test for Episodic Di...
Has a gene experienced positive selection at any site on a particular branch or set of branches? BUSTED BUSTED (branch-site unrestricted statistical test for episodic diversification)检验某个基因在特定预设分支上是否经历了选择。尤其适用于小数据集(小于10个分类单元) 下面介绍的模型适合于回答:对于某个基...
hyphy<method_name>--alignment<path_to_alignment_file><additional_method_specific_arguments> #<method_name> 就是模型的选择(可以是 absrel, bgm, busted, fade, fel, fubar, gard, meme, relax or slac) # <path_to_alignment_file>#就是你文件在的路径,相对路径或者绝对路径都可以。 ##<additional_m...
#<method_name> 就是模型的选择(可以是 absrel, bgm, busted, fade, fel, fubar, gard, meme, relax or slac) # <path_to_alignment_file>#就是你文件在的路径,相对路径或者绝对路径都可以。 ##<additional_method_specific_arguments> 一些参数,可以通过hyphy --help查看并且设置 ...
hyphy <method_name> --alignment <path_to_alignment_file> <additional_method_specific_arguments> <method_name>is the name of the analysis you wish to run (can be: absrel, bgm, busted, fade, fel, fubar, gard, meme, relax or slac) ...
Update to React 16, BUSTED phylo-alignment for single partition. Jun 8, 2019 CODE_OF_CONDUCT.md Create CODE_OF_CONDUCT.md Mar 9, 2020 CONTRIBUTING.md fix typo Mar 9, 2018 README.md Update README. Feb 3, 2018 config.json change config template to config file Feb 26, 2018 ...
/usr/lib/hyphy/bin/simd-dispatch /usr/share/doc/hyphy-common/changelog.Debian.gz /usr/share/doc/hyphy-common/copyright /usr/share/doc/hyphy-common/examples/BatchLanguage/MatrixIndexing.bf /usr/share/doc/hyphy-common/examples/BatchLanguage/profile_test.bf /usr/share/doc/hyphy-common/examples/Cate...