tutorial,someothertutorial,orisotherwisewell-versedinGROMACSsimulationmethodsandtopologyorganization.The levelofdetailinthistutorialwillbefocusedonmembraneprotein-specificconsiderations,andwillnotprovidean exhaustiveexplanationofeverystep,aswiththeLysozymetutorial. ...
Protein-Ligand Complex: The fifth tutorial instructs the user on how to deal with a protein-ligand system, with a focus on proper ligand parametrization and topology handling. Free Energy of Solvation: This tutorial describes the procedure for carrying out a simple free energy calculation, the el...
Protein-Ligand Complex:The fifth tutorial instructs the user on how to deal with a protein-ligand system, with a focus on proper ligand parametrization and topology handling. 蛋白质-配体复合体: 第五个教程指导用户如何处理蛋白质-配体系统,着重于适当的配体参数化和拓扑处理。 Free Energy of Solvation...
when a protein is involved. Users seeking to simulate membrane proteins may find this `tutorial <http://www.mdtutorials.com/gmx/membrane_protein/index.html>`__ useful. One protocol for the simulation of membrane proteins consists of the following steps: #. Choose a force field for which you...
modulesareaddressedonthefirstday,theproteinmodulesonthesecond day,andthemultigrainingmodulesonthesecondand/orthirdday.The set-upismodular,however,anddependingonyouparticularinterest,you maychangetheorderoftheexercises. Somepartsofthetutorialmaytaketoolongtofitinthetimeallottedduring ...