Functional enrichment analysis is an essential task for the interpretation of gene lists derived from large-scale genetic, transcriptomic and proteomic studies. WebGestalt (WEB-based GEne SeT AnaLysis Toolkit) has become one of the popular software tools in this field since its publication in 2005. ...
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Gene Set Enrichment Analysis (GSEA) is a powerful method for interpreting biological meaning of a list of genes by computing the overlaps with various previously defined gene sets. As one of the most widely used annotations for defining gene sets, Gene Ontology (GO) system has been used in ma...
Hub proteins were queried for enrichment from multiple databases—Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, Gene Ontology (GO), and Transfac (TF) through the g:Profiler gene set analysis toolkit (g:Profiler; https://biit.cs.ut.ee/g:Profiler/gost). The full set of network ...
Finally, we performed a competitive gene set analysis to calculate if certain gene sets were enriched in the genes with significant SNPs. GO enrichment analysis GO analysis was conducted using the WEB-based GEne SeT AnaLysis Toolkit (WebGestalt32; http://www.webgestalt.org/). The Over-...
Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate Onto-Tools is a set of four seamlessly integrated databases: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Onto-Express is able to automatica... D Sorin,K Purvesh,B Pra...
Pathway analysis was carried out using DAVID Functional Classification tool [91], the open source pathway resources of Kyoto Encyclopedia of Genes and Genomes (KEGG) (http://www.genome.jp/kegg/) [92], and the Web-based Gene Set Analysis Toolkit (WebGestalt) [93]. Real-time PCR Based on ...
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity 来自 EBSCO 喜欢 0 阅读量: 4731 作者:Y Wang,H Tang,DeBarry Jeremy D,X Tan,J Li,X Wang,Lee Tae-ho,H Jin,M Barry,H Guo 摘要: MCScan is an algorithm able to scan multiple genomes or subgenomes ...
Genome Editing Learning Center Genome Editing Support Center A complete CRISPR and TALEN gene editing toolkit To help researchers in their quest to understand how the genome influences phenotype, we’ve developed a complete set of trusted solutions for every step in the gene editing workflow. Desig...
A comprehensive toolkit for the analysis of IS is required to foster clonal tracking studies and supporting the assessment of safety and long term efficacy in vivo. This package is aimed at (1) supporting automation of IS workflow, (2) performing base and advance analysis for IS tracking (...