At genegames.org we are exploring the use of games to access the knowledge and reasoning abilities of biologist players. Through the gene annotation game ¡®GenESP', players can contribute their knowledge of gene function and disease relevance to a new kind of public gene annotation database...
Gene Ontology Annotation (GOA) is a project run by the European Bioinformatics Institute (EBI) that aims to provide assignments of terms from the Gene Ontology (GO) resource to gene products in a number of its databases (). In the first stage of this project, GO assignments have been appli...
ANNOVAR gene-based annotation 欢迎关注"生信修炼手册"! 通过基因相关注释,可以知道变异位点在基因组上的位置和对蛋白质编码的影响。在进行注释之前,首先需要下载物种对应的数据库,以human为例,命令如下 annotate_variation.pl -downdb -buildver hg19 -webfrom annovar refGene humandb/ 下载成功后,humandb...
可以直接下载annotation注释文件,获取探针序号和基因信息。 注意下载最新的注释文件,我选择的CSV格式 注意区分Human Genome U133 Set中的A、B 获取annotation CSV文件和表达矩阵,根据探针编号匹配就可以获取所有的gene_symbol、染色体位置等信息。
Gene Ontology(GO)使用指南(内部资料)
Gene ontology (GO) consists of three structured controlled vocabularies, i.e., GO domains, developed for describing attributes of gene products, and its annotation is crucial to provide a common gateway to access different model organism databases. This paper explores an effective application of text...
Annotation of gene promoters by integrative data-mining of B Bioinformatics,R Gupta,P Wikramasinghe,... 被引量: 4发表: 2010年 Close association of RNA polymerase II and many transcription factors with Pol III genes Transcription of the eukaryotic genomes is carried out by three distinct RNA pol...
ANNOVAR gene-based annotation 通过基因相关注释,可以知道变异位点在基因组上的位置和对蛋白质编码的影响。在进行注释之前,首先需要下载物种对应的数据库,以human为例,命令如下 annotate_variation.pl -downdb -buildver hg19 -webfrom annovar refGene humandb/...
-G gpl, --gpl gpl GPL file for annotation [default None] -s Gene Symbol, --symbol Gene Symbol Gene Symbol column name [default Gene Symbol] -x, --no.xaxis not show x axis sample name [default False] --log2 whether do log2 normalize [optional, default: False] ...
DAVID(Database for Annotation Visualization and Integrated Discovery)是一个综合性的生物信息学工具,除了基因功能富集分析,它也提供基因ID转换功能,将基因ID转换为其他常用的ID类型。 DAVID链接: https://david.ncifcrf.gov/home.jsp 2 BioMart 关于最强大的基因ID转换工具,非Ensembl的BioMart莫属,如下图,那么如何...