BioinformaticsGene expressionGene annotationAgingMicroarray profiling of gene expression is a powerful tool for discovery, but the ability to manage and compare... P Cahan,F Rovegno,D Mooney,... - 《Gene》 被引量: 328发表: 2007年 SeqWare Query Engine: storing and searching sequence data in th...
bioinformaticsdatabasesfunctional genomicsgene annotationprotein interactiontoxicogenomics"Omics" experiments amass large amounts of data requiring integration of several data sources for data interpretation. For instance, microarray, metabolomic, and proteomic experiments may at most yield a list of active ...
pythonapibioinformaticsgeneswaggerontologiesphenotypesmodel-organisms UpdatedApr 26, 2022 Python A minimal desktop app for easy and convenient gene annotation and lookup. bioinformaticsgenegeneticslookupdesktop-applicationgene-annotationprotein-function UpdatedDec 7, 2022 ...
Protein Functional Annotation PierLuigi Martelli, ...RitaCasadio, inEncyclopedia of Bioinformatics and Computational Biology, 2019 The Gene Ontology TheGene Ontologyproject started in 1998 with the goal of providing a controlled vocabulary of terms for describing gene product functional characteristics in a...
注意:现在最新的参考基因组为GRch38,去除了很多错误序列信息,而且更具有总体人群参考代表性。以往的GRch37因为注释信息(annotation)更全面和丰富,仍为很多研究者所使用, 但其最终将被GRch38所取代。 3、基因组位置,转录本, 功能产物信息 该部分采用类似UCSC Genomic Brow...
A novel method for automatic functional annotation of proteins. Bioinformatics 15, 228–233 (1999). Article CAS Google Scholar The FlyBase Consortium. The FlyBase database of the Drosophila Genome Projects and community literature. Nucleic Acids Res. 27, 85–88 (1999). Blake, J.A. et al....
Once theCpG sitesor regions are associated with genes, a statistical test for enrichment of differentialmethylationcan be performed against gene annotation databases, such asGene Ontologyor KEGG Pathways. Standard methods, such as Fisher’s exact test, can be used when only considering differential me...
Gene synthesis enables creation and modification of genetic sequences at an unprecedented pace, offering enormous potential for new biological functionality but also increasing the need for biosurveillance. In this paper, we introduce a bioinformatics te
Prokaryotic Genome Annotation Pipeline Manual curation Propagation from annotated genomes that are submitted to members of theInternational Nucleotide Sequence Database Collaboration(INSDC) GENCODE ENSEMBL Ensembl数据库有自己的一套命名规则,Ensembl gene、Ensembl transcript等stable_ids, ...
A comprehensive analysis and annotation of human normal urinary proteome. Sci. Rep. 7, 3024 (2017). PubMed PubMed Central Google Scholar Cso˝sz, É. et al. Quantitative body fluid proteomics in medicine - a focus on minimal invasiveness. J. Proteomics 153, 30–43 (2017). PubMed ...